Biologyarticle2026-08-29

Volumetric reference data of the orbit: a deep learning MRI analysis in the German national cohort

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Abstract

Abstract Manual segmentation of orbital magnetic resonance imaging (MRI) is labor-intensive, hindering large-scale morphometric studies. To overcome this, we developed a fully automated deep learning pipeline to segment orbital MRIs and establish age- and sex-stratified normative reference data. We analyzed T1-weighted brain MRIs from 30,868 participants in the population-based German National Cohort (NAKO). After quality control, 28,779 participants (mean age 48.1 years; 44.1% female) were included. The model, validated against expert manual segmentations, accurately extracted 34 volumetric and geometric parameters across 15 orbital structures (Dice Similarity Coefficients: vitreous 0.97, lens 0.89, optic nerve 0.85). Mean [SD] axial length was 23.5 [1.2] mm. Mean [SD] volumes were 34.4 [3.9] cm³ for total orbital contents, 6.3 [0.8] cm³ for the vitreous, and 0.17 [0.03] cm³ for the lens. Males exhibited significantly larger dimensions across all parameters ( p < 0.001). Age-stratified percentile curves revealed continuous age-dependent lens growth (Spearman’s ρ = 0.57 in men, 0.51 in women) alongside modest volume increases in the orbit, optic nerve, and extraocular muscles. This deep learning tool effectively resolved the bottleneck of manual segmentation, providing comprehensive orbital reference data for the German population. This foundation enables future high-throughput epidemiological research into the associations between orbital anatomy, systemic health, and disease.

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View paper (DOI)Open access versionOpenAlexScientific ReportsPublished 2026-08-29

Authors: Navid Farassat, Marco Reisert, Susanne Rospleszcz, J. E. Rod, Daniel Böhringer, Thomas Kroencke, Thoralf Niendorf, Tobias Pischon, Henry Völzke, Steffen Ringhof, Thomas Reinhard, Fabian Bamberg, Wolf A. Lagrèze, Christopher L. Schlett, Kevin Wornath, Moisés Felipe Molina-Fuentes

Institutions: Charité - Universitätsmedizin Berlin, Freie Universität Berlin, Humboldt-Universität zu Berlin, University of Zurich, University Hospital Zurich, University of Freiburg, University Medical Center Freiburg, University of Augsburg, University Hospital Augsburg, Universitätsmedizin Greifswald, Universidad del Norte, Max Delbrück Center