The team created a toolkit for modifying Lachnospiraceae, a widespread family of oxygen-sensitive gut bacteria that has been difficult to engineer. The toolkit includes systems for turning genes on continuously or in response to signals, inserting genes into bacterial chromosomes and releasing proteins from the cells.

Using the gut bacterium Coprococcus comes, the researchers programmed the microbes to release the immune signal interleukin-22 in the intestines of mice. The signal activated gene programs involved in the gut lining’s defenses. In mice with metabolic dysfunction-associated fatty liver disease, the engineered bacteria improved glucose control, reduced bacterial toxins in the bloodstream and lessened fat buildup in the liver.