Spatial transcriptomics reveals microenvironmental heterogeneity in osteoarthritic subchondral bone
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Abstract
This repository contains the custom R scripts used for the spatial transcriptomics analysis of subchondral bone. The workflow includes Visium HD/Visium preprocessing, RCTD-based cell type deconvolution, regional functional analysis, and so on.
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Authors: Weiqiang Lin, Xinyi Xiao, Di Tian, Yun Gong, Lei Huang, Woong‐Ki Kim, Md Ariful Islam, Guihua Pan, Binghao Zou, Zhe Luo, Qing Tian, William Sherman, Fernando Sánchez, Austin Ross, Chuan Qiu, Yiping Li, Hui Shen, Hong‐Wen Deng