Research Institute of Molecular Pathology

Unified down-stream analysis of crosslinking mass spectrometry results with pyXLMS

Abstract Crosslinking mass spectrometry has become the method of choice for the identification of protein-protein interactions and for gaining insight into the structures of proteins in vivo. However, connecting crosslink search engine results with down-stream analysis tools, and...

An evolutionarily conserved N-terminal domain of RRF-3 governs GTSF-1 binding in nematodes

Abstract GTSF1 is an essential activating cofactor for PIWI proteins in many metazoans. In the nematode Caenorhabditis elegans , however, GTSF-1 does not bind PIWI, but is associated with the RNA-dependent RNA polymerase RRF-3, supporting endo-siRNA (26G-RNA) biogenesis. Here, we...

A machine learning–derived sarcopenia index is associated with survival and nonrelapse mortality in DLBCL

Abstract Body composition analysis (BCA) provides an objective assessment of metabolic states, but its prognostic value in diffuse large B-cell lymphoma (DLBCL) remains unclear. We applied machine learning–supported BCA to computed tomography imaging from patients with newly diag...