Infectious Disease Research Institute

pileup-hi: an ultra-high-throughput, customizable alignment pileup program for large datasets

Abstract Motivation Recent advancements in next-generation sequencing have combined massive data throughput with high read accuracy to facilitate large-scale, rapid, and sensitive analysis of genetic variation. High-depth, high-quality platforms such as the Illumina NovaSeq X and...

Burden and Risk Factors for Severe Respiratory Syncytial Virus Infection Among Pediatric Hematopoietic Cell Transplant Recipients

BACKGROUND: Respiratory syncytial virus (RSV) causes substantial morbidity in pediatric hematopoietic cell transplant (HCT) recipients; however, risk factors for severe disease remain incompletely characterized. METHODS: We conducted a multicenter retrospective cohort study acros...