Institution
Bioinformatics Institute
Recent research
- BiologyOpen access
The reference genome of Valencia hispanica , a critically endangered actinopterygian species endemic to the Iberian Peninsula, is key to unravelling its genetic architecture and adaptation to freshwater ecosystems. This genomic resource will enable targeted conservation efforts a...
- BiologyOpen access
Analysis code for the metagenome assembly, bin refinement/QC, read mapping/coverage, taxonomic profiling, genome taxonomy/phylogenetics, genome annotation, and COG functional-annotation comparison steps described in the Materials and Methods of "Substrate-associated variation in...
- BiologyOpen access
Programmatic access to ICTV virus taxonomy through a public ontology API
Abstract Background The International Committee on Taxonomy of Viruses (ICTV) is responsible for developing and maintaining a universal virus taxonomy. As the reference framework for organising the viral world, it is essential for virology and related fields. Despite its widespre...
- BiologyOpen access
Integrated metabolomics data analysis to generate mechanistic hypotheses with MetaProViz
ABSTRACT With the growing number of metabolomics and lipidomics studies, robust strategies for bioinformatic analyses are increasingly important. However, the absence of standardized and reproducible workflows, coupled with ambiguous metabolite annotations, hampers effective anal...
- Health & MedicineOpen access
Robustness and cross-cohort concordance of developmental regulons in endometrial carcinoma
Claims about regulatory differences among endometrial carcinoma molecular classes must distinguish association, target-set robustness, and cross-cohort transportability. We evaluated a fetal Müllerian epithelial module and 20 prespecified developmental transcription-factor regulo...