Florian Ingels

Minimizer Density Revisited: Models and Multiminimizers

High-throughput sequence analysis commonly relies on k-mers and sampling schemes to improve scalability and data locality. Among these, local schemes are widely used and are typically evaluated by their density, the expected fraction of selected positions. Minimizers are the most...

Super Bloom: Fast and Precise Filter for Streaming k -Mer Queries

Approximate membership query structures are used throughout sequence bioinformatics, from read screening and metagenomic classification to assembly, indexing, and error correction. Among them, Bloom filters remain the default choice. They are not the most efficient structures in...